4.15. calc_bam_read_depths

Generates read depth tables.

4.15.1. Inputs

4.15.1.1. Required inputs

calc_bam_read_depths.aligned_bams
Array[File]+ — Default: None
Reads aligned to a reference sequence.

4.15.1.2. Other inputs

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calc_bam_read_depths.depth.docker
String — Default: "quay.io/broadinstitute/viral-core:2.1.33"
???

calc_bam_read_depths.depth.out_basename
String — Default: basename(aligned_bam,'.bam')
???

4.15.2. Outputs

calc_bam_read_depths.read_depths
Array[File]
???

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Generated using WDL AID (1.0.0)