# calc_bam_read_depths
Generates read depth tables.

## Inputs

### Required inputs
<p name="calc_bam_read_depths.aligned_bams">
        <b>calc_bam_read_depths.aligned_bams</b><br />
        <i>Array[File]+ &mdash; Default: None</i><br />
        Reads aligned to a reference sequence.
</p>

### Other inputs
<details>
<summary> Show/Hide </summary>
<p name="calc_bam_read_depths.depth.docker">
        <b>calc_bam_read_depths.depth.docker</b><br />
        <i>String &mdash; Default: "quay.io/broadinstitute/viral-core:2.1.33"</i><br />
        ???
</p>
<p name="calc_bam_read_depths.depth.out_basename">
        <b>calc_bam_read_depths.depth.out_basename</b><br />
        <i>String &mdash; Default: basename(aligned_bam,'.bam')</i><br />
        ???
</p>
</details>

## Outputs
<p name="calc_bam_read_depths.read_depths">
        <b>calc_bam_read_depths.read_depths</b><br />
        <i>Array[File]</i><br />
        ???
</p>

<hr />

> Generated using WDL AID (1.0.0)