4.36. newick_to_auspice

Convert a newick formatted phylogenetic tree into a json suitable for auspice visualization. See https://nextstrain-augur.readthedocs.io/en/stable/usage/cli/export.html

4.36.1. Inputs

4.36.1.1. Required inputs

newick_to_auspice.export_auspice_json.auspice_config
File — Default: None
???

newick_to_auspice.export_auspice_json.node_data_jsons
Array[File] — Default: None
???

newick_to_auspice.export_auspice_json.tree
File — Default: None
???

4.36.1.2. Other inputs

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newick_to_auspice.export_auspice_json.color_by_metadata
Array[String]? — Default: None
???

newick_to_auspice.export_auspice_json.colors_tsv
File? — Default: None
???

newick_to_auspice.export_auspice_json.description_md
File? — Default: None
???

newick_to_auspice.export_auspice_json.docker
String — Default: "nextstrain/base"
???

newick_to_auspice.export_auspice_json.geo_resolutions
Array[String]? — Default: None
???

newick_to_auspice.export_auspice_json.lat_longs_tsv
File? — Default: None
???

newick_to_auspice.export_auspice_json.machine_mem_gb
Int? — Default: None
???

newick_to_auspice.export_auspice_json.maintainers
Array[String]? — Default: None
???

newick_to_auspice.export_auspice_json.sample_metadata
File? — Default: None
???

newick_to_auspice.export_auspice_json.title
String? — Default: None
???

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