4.29. mafft_and_trim

4.29.1. Inputs

4.29.1.1. Required inputs

mafft_and_trim.mafft.assemblies_fasta
Array[File]+ — Default: None
???

4.29.1.2. Other inputs

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mafft_and_trim.mafft.docker
String — Default: "quay.io/broadinstitute/viral-phylo"
???

mafft_and_trim.mafft.machine_mem_gb
Int? — Default: None
???

mafft_and_trim.mafft.mafft_ep
Float? — Default: None
???

mafft_and_trim.mafft.mafft_gapOpeningPenalty
Float? — Default: None
???

mafft_and_trim.mafft.mafft_maxIters
Int? — Default: None
???

mafft_and_trim.mafft.out_prefix
String — Default: "aligned"
???

mafft_and_trim.trimal.docker
String — Default: "quay.io/biocontainers/trimal:1.4.1--h6bb024c_3"
???

mafft_and_trim.trimal.input_basename
String — Default: basename(basename(in_aligned_fasta,".fasta"),".fa")
???

mafft_and_trim.trimal.machine_mem_gb
Int? — Default: None
???

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