4.33. merge_vcfs

4.33.1. Inputs

4.33.1.1. Required inputs

merge_vcfs.merge_vcfs_gatk.in_vcfs_gz
Array[File] — Default: None
VCF files to merged; should be (b)gzipped.

merge_vcfs.merge_vcfs_gatk.ref_fasta
File — Default: None
fasta file of reference genome relative to which the input VCF sites were called

4.33.1.2. Other inputs

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merge_vcfs.merge_vcfs_gatk.docker
String — Default: "quay.io/broadinstitute/viral-phylo"
???

merge_vcfs.merge_vcfs_gatk.machine_mem_gb
Int? — Default: None
???

merge_vcfs.merge_vcfs_gatk.output_prefix
String — Default: "merged"
???

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