4.63. sarscov2_nextclade_multi

Create Nextclade visualizations on many SARS-CoV-2 genomes

4.63.1. Inputs

4.63.1.1. Required inputs

sarscov2_nextclade_multi.genome_fastas
Array[File]+ — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.basename
String — Default: None
???

4.63.1.2. Other inputs

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sarscov2_nextclade_multi.nextclade_many_samples.auspice_reference_tree_json
File? — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.disk_size
Int — Default: 150
???

sarscov2_nextclade_multi.nextclade_many_samples.docker
String — Default: "nextstrain/nextclade:2.12.0"
???

sarscov2_nextclade_multi.nextclade_many_samples.gene_annotations_json
File? — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.genome_ids_setdefault_blank
File? — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.pcr_primers_csv
File? — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.qc_config_json
File? — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.root_sequence
File? — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.virus_properties
File? — Default: None
???

4.63.2. Outputs

sarscov2_nextclade_multi.auspice_json
File
???

sarscov2_nextclade_multi.nextclade_json
File
???

sarscov2_nextclade_multi.nextclade_tsv
File
???

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