4.43. mafft

MAFFT multiple-alignment for a set of possibly multi-segment genomes.

4.43.1. Inputs

4.43.1.1. Required inputs

mafft.multi_align_mafft.assemblies_fasta
Array[File]+ — Default: None
???

4.43.1.2. Other inputs

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mafft.multi_align_mafft.docker
String — Default: "quay.io/broadinstitute/viral-phylo:2.1.20.2"
???

mafft.multi_align_mafft.machine_mem_gb
Int? — Default: None
???

mafft.multi_align_mafft.mafft_ep
Float? — Default: None
???

mafft.multi_align_mafft.mafft_gapOpeningPenalty
Float? — Default: None
???

mafft.multi_align_mafft.mafft_maxIters
Int? — Default: None
???

mafft.multi_align_mafft.out_prefix
String — Default: "aligned"
???

4.43.2. Outputs

mafft.alignments_by_chr
Array[File]
???

mafft.sampleNamesFile
File
???

mafft.viral_phylo_version
String
???

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