4.14. bams_multiqc¶

Run FastQC on a set of BAM files, and then MultiQC to summarize all outputs.

4.14.1. Inputs¶

bams_multiqc.read_bams
Array[File]+ — Default: None
???

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bams_multiqc.multiqc_from_bams.comment
String? — Default: None
???

bams_multiqc.multiqc_from_bams.config
File? — Default: None
???

bams_multiqc.multiqc_from_bams.config_yaml
String? — Default: None
???

bams_multiqc.multiqc_from_bams.docker
String — Default: "ghcr.io/broadinstitute/read-qc-tools:1.0.1"
???

bams_multiqc.multiqc_from_bams.full_names
Boolean — Default: false
???

bams_multiqc.multiqc_from_bams.interactive
Boolean — Default: true
???

bams_multiqc.multiqc_from_bams.title
String? — Default: None
???

bams_multiqc.fastqcs
Array[File]
???

bams_multiqc.multiqc
File
???

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