# bams_multiqc
Run FastQC on a set of BAM files, and then MultiQC to summarize all outputs.

## Inputs

### Required inputs
<p name="bams_multiqc.read_bams">
        <b>bams_multiqc.read_bams</b><br />
        <i>Array[File]+ &mdash; Default: None</i><br />
        ???
</p>

### Other inputs
<details>
<summary> Show/Hide </summary>
<p name="bams_multiqc.multiqc_from_bams.comment">
        <b>bams_multiqc.multiqc_from_bams.comment</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
<p name="bams_multiqc.multiqc_from_bams.config">
        <b>bams_multiqc.multiqc_from_bams.config</b><br />
        <i>File? &mdash; Default: None</i><br />
        ???
</p>
<p name="bams_multiqc.multiqc_from_bams.config_yaml">
        <b>bams_multiqc.multiqc_from_bams.config_yaml</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
<p name="bams_multiqc.multiqc_from_bams.docker">
        <b>bams_multiqc.multiqc_from_bams.docker</b><br />
        <i>String &mdash; Default: "ghcr.io/broadinstitute/read-qc-tools:1.0.1"</i><br />
        ???
</p>
<p name="bams_multiqc.multiqc_from_bams.full_names">
        <b>bams_multiqc.multiqc_from_bams.full_names</b><br />
        <i>Boolean &mdash; Default: false</i><br />
        ???
</p>
<p name="bams_multiqc.multiqc_from_bams.interactive">
        <b>bams_multiqc.multiqc_from_bams.interactive</b><br />
        <i>Boolean &mdash; Default: true</i><br />
        ???
</p>
<p name="bams_multiqc.multiqc_from_bams.title">
        <b>bams_multiqc.multiqc_from_bams.title</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
</details>

## Outputs
<p name="bams_multiqc.fastqcs">
        <b>bams_multiqc.fastqcs</b><br />
        <i>Array[File]</i><br />
        ???
</p>
<p name="bams_multiqc.multiqc">
        <b>bams_multiqc.multiqc</b><br />
        <i>File</i><br />
        ???
</p>

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