4.50. merge_vcfs¶
Merge VCFs from multiple samples using GATK3.
4.50.1. Inputs¶
4.50.1.1. Required inputs¶
merge_vcfs.merge_vcfs_gatk.in_vcfs_gz
Array[File] — Default: None
VCF files to merged; should be (b)gzipped.
merge_vcfs.merge_vcfs_gatk.ref_fasta
File — Default: None
fasta file of reference genome relative to which the input VCF sites were called
4.50.1.2. Other inputs¶
Show/Hide
merge_vcfs.merge_vcfs_gatk.docker
String — Default: "quay.io/broadinstitute/viral-phylo:2.1.20.2"
???
merge_vcfs.merge_vcfs_gatk.machine_mem_gb
Int? — Default: None
???
merge_vcfs.merge_vcfs_gatk.output_prefix
String — Default: "merged"
???
4.50.2. Outputs¶
merge_vcfs.merged_vcf_gz
File
???
merge_vcfs.merged_vcf_gz_tbi
File
???
Generated using WDL AID (1.0.0)