4.39. isnvs_lofreq

variant calls by LoFreq against reference_fasta

4.39.1. Inputs

4.39.1.1. Required inputs

isnvs_lofreq.aligned_bams
Array[File]+ — Default: None
reads aligned to the sequence within reference_fasta.

isnvs_lofreq.reference_fasta
File — Default: None
Reference sequence to which reads have be aligned

4.39.1.2. Other inputs

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isnvs_lofreq.lofreq.docker
String — Default: "quay.io/biocontainers/lofreq:2.1.5--py38h588ecb2_4"
???

isnvs_lofreq.lofreq.out_basename
String — Default: basename(aligned_bam,'.bam')
???

4.39.2. Outputs

isnvs_lofreq.lofreq_vcfs
Array[File]
???

isnvs_lofreq.lofreq_version
String
???

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