# classify_kaiju
Taxonomic classification of reads with kaiju.

## Inputs

### Required inputs
<p name="classify_kaiju.kaiju.kaiju_db_lz4">
        <b>classify_kaiju.kaiju.kaiju_db_lz4</b><br />
        <i>File &mdash; Default: None</i><br />
        ???
</p>
<p name="classify_kaiju.kaiju.krona_taxonomy_db_tgz">
        <b>classify_kaiju.kaiju.krona_taxonomy_db_tgz</b><br />
        <i>File &mdash; Default: None</i><br />
        ???
</p>
<p name="classify_kaiju.kaiju.ncbi_taxonomy_db_tgz">
        <b>classify_kaiju.kaiju.ncbi_taxonomy_db_tgz</b><br />
        <i>File &mdash; Default: None</i><br />
        ???
</p>
<p name="classify_kaiju.kaiju.reads_unmapped_bam">
        <b>classify_kaiju.kaiju.reads_unmapped_bam</b><br />
        <i>File &mdash; Default: None</i><br />
        ???
</p>

### Other inputs
<details>
<summary> Show/Hide </summary>
<p name="classify_kaiju.kaiju.docker">
        <b>classify_kaiju.kaiju.docker</b><br />
        <i>String &mdash; Default: "ghcr.io/broadinstitute/viral-ngs:3.0.4-classify"</i><br />
        ???
</p>
<p name="classify_kaiju.kaiju.machine_mem_gb">
        <b>classify_kaiju.kaiju.machine_mem_gb</b><br />
        <i>Int &mdash; Default: 100</i><br />
        ???
</p>
</details>

## Outputs
<p name="classify_kaiju.kaiju_reads">
        <b>classify_kaiju.kaiju_reads</b><br />
        <i>File</i><br />
        ???
</p>
<p name="classify_kaiju.kaiju_report">
        <b>classify_kaiju.kaiju_report</b><br />
        <i>File</i><br />
        ???
</p>
<p name="classify_kaiju.krona_report_html">
        <b>classify_kaiju.krona_report_html</b><br />
        <i>File</i><br />
        ???
</p>
<p name="classify_kaiju.viral_classify_version">
        <b>classify_kaiju.viral_classify_version</b><br />
        <i>String</i><br />
        ???
</p>

<hr />

> Generated using WDL AID (1.0.0)