4.51. mafft

MAFFT multiple-alignment for a set of possibly multi-segment genomes.

4.51.1. Inputs

4.51.1.1. Required inputs

mafft.multi_align_mafft_ref.assemblies_fasta
Array[File]+ — Default: None
???

mafft.multi_align_mafft_ref.reference_fasta
File — Default: None
???

4.51.1.2. Other inputs

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mafft.multi_align_mafft_ref.docker
String — Default: "quay.io/broadinstitute/viral-phylo:2.5.16.0"
???

mafft.multi_align_mafft_ref.machine_mem_gb
Int? — Default: None
???

mafft.multi_align_mafft_ref.mafft_ep
Float? — Default: None
???

mafft.multi_align_mafft_ref.mafft_gapOpeningPenalty
Float? — Default: None
???

mafft.multi_align_mafft_ref.mafft_maxIters
Int? — Default: None
???

4.51.2. Outputs

mafft.alignments_by_chr
Array[File]
???

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