4.25. CreateEntericsQCViz

4.25.1. Inputs

4.25.1.1. Required inputs

CreateEntericsQCViz.create_viz.assembly_length
Array[String] — Default: None
assembly length metrics for selected samples

CreateEntericsQCViz.create_viz.est_coverage_clean
Array[String] — Default: None
estimated coverage metrics for selected samples

CreateEntericsQCViz.create_viz.gambit_predicted_taxon
Array[String] — Default: None
predicted gambits for selected samples

CreateEntericsQCViz.create_viz.number_contigs
Array[String] — Default: None
number contigs metrics for selected samples

CreateEntericsQCViz.create_viz.sample_ids
Array[String] — Default: None
selected samples of data

4.25.1.2. Other inputs

Show/Hide

CreateEntericsQCViz.create_viz.docker
String — Default: "us-central1-docker.pkg.dev/pgs-automation/enterics-visualizations/create_visualization_html:v6"
???

CreateEntericsQCViz.create_viz.output_filename
String — Default: "QC_visualizations.html"
name of output file containing visualizations

CreateEntericsQCViz.create_viz.thresholds_file
File? — Default: None
JSON file containing custom thresholds

4.25.2. Outputs

CreateEntericsQCViz.visualization_html
File
???

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