4.70. sarscov2_nextclade_multi

Create Nextclade visualizations on many SARS-CoV-2 genomes

4.70.1. Inputs

4.70.1.1. Required inputs

sarscov2_nextclade_multi.genome_fastas
Array[File]+ — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.basename
String — Default: None
???

4.70.1.2. Other inputs

Show/Hide

sarscov2_nextclade_multi.nextclade_many_samples.auspice_reference_tree_json
File? — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.disk_size
Int — Default: 150
???

sarscov2_nextclade_multi.nextclade_many_samples.docker
String — Default: "nextstrain/nextclade:3.8.2"
???

sarscov2_nextclade_multi.nextclade_many_samples.gene_annotations_json
File? — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.genome_ids_setdefault_blank
File? — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.pathogen_json
File? — Default: None
???

sarscov2_nextclade_multi.nextclade_many_samples.root_sequence
File? — Default: None
???

4.70.2. Outputs

sarscov2_nextclade_multi.auspice_json
File
???

sarscov2_nextclade_multi.nextclade_json
File
???

sarscov2_nextclade_multi.nextclade_tsv
File
???

---

Generated using WDL AID (1.0.0)