# multiqc_only
Combine multiple FastQC reports into a single MultiQC summary.

## Inputs

### Required inputs
<p name="multiqc_only.input_files">
        <b>multiqc_only.input_files</b><br />
        <i>Array[File] &mdash; Default: None</i><br />
        ???
</p>

### Other inputs
<details>
<summary> Show/Hide </summary>
<p name="multiqc_only.file_name">
        <b>multiqc_only.file_name</b><br />
        <i>String &mdash; Default: "multiqc-raw.html"</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.comment">
        <b>multiqc_only.MultiQC.comment</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.config">
        <b>multiqc_only.MultiQC.config</b><br />
        <i>File? &mdash; Default: None</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.config_yaml">
        <b>multiqc_only.MultiQC.config_yaml</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.data_dir">
        <b>multiqc_only.MultiQC.data_dir</b><br />
        <i>Boolean &mdash; Default: false</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.docker">
        <b>multiqc_only.MultiQC.docker</b><br />
        <i>String &mdash; Default: "quay.io/biocontainers/multiqc:1.8--py_2"</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.exclude_modules">
        <b>multiqc_only.MultiQC.exclude_modules</b><br />
        <i>Array[String]? &mdash; Default: None</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.export">
        <b>multiqc_only.MultiQC.export</b><br />
        <i>Boolean &mdash; Default: false</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.flat">
        <b>multiqc_only.MultiQC.flat</b><br />
        <i>Boolean &mdash; Default: false</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.force">
        <b>multiqc_only.MultiQC.force</b><br />
        <i>Boolean &mdash; Default: false</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.full_names">
        <b>multiqc_only.MultiQC.full_names</b><br />
        <i>Boolean &mdash; Default: false</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.ignore_analysis_files">
        <b>multiqc_only.MultiQC.ignore_analysis_files</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.ignore_sample_names">
        <b>multiqc_only.MultiQC.ignore_sample_names</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.interactive">
        <b>multiqc_only.MultiQC.interactive</b><br />
        <i>Boolean &mdash; Default: true</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.lint">
        <b>multiqc_only.MultiQC.lint</b><br />
        <i>Boolean &mdash; Default: false</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.megaQC_upload">
        <b>multiqc_only.MultiQC.megaQC_upload</b><br />
        <i>Boolean &mdash; Default: false</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.module_to_use">
        <b>multiqc_only.MultiQC.module_to_use</b><br />
        <i>Array[String]? &mdash; Default: None</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.no_data_dir">
        <b>multiqc_only.MultiQC.no_data_dir</b><br />
        <i>Boolean &mdash; Default: false</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.out_dir">
        <b>multiqc_only.MultiQC.out_dir</b><br />
        <i>String &mdash; Default: "./multiqc-output"</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.output_data_format">
        <b>multiqc_only.MultiQC.output_data_format</b><br />
        <i>String? &mdash; Default: None</i><br />
        [tsv|yaml|json] default:tsv
</p>
<p name="multiqc_only.MultiQC.pdf">
        <b>multiqc_only.MultiQC.pdf</b><br />
        <i>Boolean &mdash; Default: false</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.sample_names">
        <b>multiqc_only.MultiQC.sample_names</b><br />
        <i>File? &mdash; Default: None</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.tag">
        <b>multiqc_only.MultiQC.tag</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.template">
        <b>multiqc_only.MultiQC.template</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.title">
        <b>multiqc_only.MultiQC.title</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
<p name="multiqc_only.MultiQC.zip_data_dir">
        <b>multiqc_only.MultiQC.zip_data_dir</b><br />
        <i>Boolean &mdash; Default: false</i><br />
        ???
</p>
</details>

## Outputs
<p name="multiqc_only.multiqc">
        <b>multiqc_only.multiqc</b><br />
        <i>File</i><br />
        ???
</p>

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> Generated using WDL AID (1.0.0)