# merge_bams
Merge, reheader, or merge-and-reheader BAM files.

## Inputs

### Required inputs
<p name="merge_bams.merge_and_reheader_bams.in_bams">
        <b>merge_bams.merge_and_reheader_bams.in_bams</b><br />
        <i>Array[File]+ &mdash; Default: None</i><br />
        ???
</p>

### Other inputs
<details>
<summary> Show/Hide </summary>
<p name="merge_bams.merge_and_reheader_bams.docker">
        <b>merge_bams.merge_and_reheader_bams.docker</b><br />
        <i>String &mdash; Default: "quay.io/broadinstitute/viral-core:2.1.33"</i><br />
        ???
</p>
<p name="merge_bams.merge_and_reheader_bams.out_basename">
        <b>merge_bams.merge_and_reheader_bams.out_basename</b><br />
        <i>String &mdash; Default: basename(in_bams[0],".bam")</i><br />
        ???
</p>
<p name="merge_bams.merge_and_reheader_bams.reheader_table">
        <b>merge_bams.merge_and_reheader_bams.reheader_table</b><br />
        <i>File? &mdash; Default: None</i><br />
        ???
</p>
<p name="merge_bams.merge_and_reheader_bams.sample_name">
        <b>merge_bams.merge_and_reheader_bams.sample_name</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
</details>

## Outputs
<p name="merge_bams.out_bam">
        <b>merge_bams.out_bam</b><br />
        <i>File</i><br />
        ???
</p>
<p name="merge_bams.viral_core_version">
        <b>merge_bams.viral_core_version</b><br />
        <i>String</i><br />
        ???
</p>

<hr />

> Generated using WDL AID (1.0.0)