# chunk_megablast
Chunk megablast function

## Inputs

### Required inputs
<p name="chunk_megablast.blast_db_tgz">
        <b>chunk_megablast.blast_db_tgz</b><br />
        <i>File &mdash; Default: None</i><br />
        ???
</p>
<p name="chunk_megablast.db_name">
        <b>chunk_megablast.db_name</b><br />
        <i>String &mdash; Default: None</i><br />
        ???
</p>
<p name="chunk_megablast.inFasta">
        <b>chunk_megablast.inFasta</b><br />
        <i>File &mdash; Default: None</i><br />
        ???
</p>

### Other inputs
<details>
<summary> Show/Hide </summary>
<p name="chunk_megablast.ChunkBlastHits.chunkSize">
        <b>chunk_megablast.ChunkBlastHits.chunkSize</b><br />
        <i>Int &mdash; Default: 1000000</i><br />
        ???
</p>
<p name="chunk_megablast.ChunkBlastHits.cpu">
        <b>chunk_megablast.ChunkBlastHits.cpu</b><br />
        <i>Int &mdash; Default: 16</i><br />
        ???
</p>
<p name="chunk_megablast.ChunkBlastHits.disk_size_gb">
        <b>chunk_megablast.ChunkBlastHits.disk_size_gb</b><br />
        <i>Int &mdash; Default: 300</i><br />
        ???
</p>
<p name="chunk_megablast.ChunkBlastHits.docker">
        <b>chunk_megablast.ChunkBlastHits.docker</b><br />
        <i>String &mdash; Default: "quay.io/broadinstitute/viral-classify:fn_blast"</i><br />
        ???
</p>
<p name="chunk_megablast.ChunkBlastHits.log_dir">
        <b>chunk_megablast.ChunkBlastHits.log_dir</b><br />
        <i>String? &mdash; Default: None</i><br />
        ???
</p>
<p name="chunk_megablast.ChunkBlastHits.machine_mem_gb">
        <b>chunk_megablast.ChunkBlastHits.machine_mem_gb</b><br />
        <i>Int &mdash; Default: 64</i><br />
        ???
</p>
<p name="chunk_megablast.ChunkBlastHits.max_target_seqs">
        <b>chunk_megablast.ChunkBlastHits.max_target_seqs</b><br />
        <i>Int &mdash; Default: 1</i><br />
        ???
</p>
<p name="chunk_megablast.ChunkBlastHits.outfmt">
        <b>chunk_megablast.ChunkBlastHits.outfmt</b><br />
        <i>String &mdash; Default: "6 qseqid sacc stitle staxids sscinames sskingdoms qlen slen length pident qcovs evalue"</i><br />
        ???
</p>
<p name="chunk_megablast.ChunkBlastHits.output_type">
        <b>chunk_megablast.ChunkBlastHits.output_type</b><br />
        <i>String &mdash; Default: "full_line"</i><br />
        ???
</p>
<p name="chunk_megablast.ChunkBlastHits.tasks">
        <b>chunk_megablast.ChunkBlastHits.tasks</b><br />
        <i>String &mdash; Default: "megablast"</i><br />
        ???
</p>
<p name="chunk_megablast.ChunkBlastHits.taxidlist">
        <b>chunk_megablast.ChunkBlastHits.taxidlist</b><br />
        <i>File? &mdash; Default: None</i><br />
        ???
</p>
</details>

## Outputs
<p name="chunk_megablast.blast_filter_logs">
        <b>chunk_megablast.blast_filter_logs</b><br />
        <i>File</i><br />
        ???
</p>
<p name="chunk_megablast.blast_hits">
        <b>chunk_megablast.blast_hits</b><br />
        <i>File</i><br />
        ???
</p>
<p name="chunk_megablast.chunk_blast_runtime">
        <b>chunk_megablast.chunk_blast_runtime</b><br />
        <i>File</i><br />
        ???
</p>
<p name="chunk_megablast.cpu_load">
        <b>chunk_megablast.cpu_load</b><br />
        <i>String</i><br />
        ???
</p>
<p name="chunk_megablast.max_ram_gb">
        <b>chunk_megablast.max_ram_gb</b><br />
        <i>Int</i><br />
        ???
</p>

<hr />

> Generated using WDL AID (1.0.0)