# genbank_gather
Consolidate all genbank submission files for individual genomes into bulk submission packages grouped by submission pathway.

## Inputs

### Required inputs
<p name="genbank_gather.genbank_file_manifest">
        <b>genbank_gather.genbank_file_manifest</b><br />
        <i>Array[String?] &mdash; Default: None</i><br />
        ???
</p>
<p name="genbank_gather.genbank_submit_files">
        <b>genbank_gather.genbank_submit_files</b><br />
        <i>Array[File?] &mdash; Default: None</i><br />
        ???
</p>
<p name="genbank_gather.package_genbank_submissions.account_name">
        <b>genbank_gather.package_genbank_submissions.account_name</b><br />
        <i>String &mdash; Default: None</i><br />
        ???
</p>
<p name="genbank_gather.package_genbank_submissions.authors_sbt">
        <b>genbank_gather.package_genbank_submissions.authors_sbt</b><br />
        <i>File &mdash; Default: None</i><br />
        ???
</p>
<p name="genbank_gather.package_genbank_submissions.spuid_base">
        <b>genbank_gather.package_genbank_submissions.spuid_base</b><br />
        <i>String &mdash; Default: None</i><br />
        ???
</p>
<p name="genbank_gather.package_genbank_submissions.spuid_namespace">
        <b>genbank_gather.package_genbank_submissions.spuid_namespace</b><br />
        <i>String &mdash; Default: None</i><br />
        ???
</p>

### Other inputs
<details>
<summary> Show/Hide </summary>
<p name="genbank_gather.package_genbank_submissions.cpus">
        <b>genbank_gather.package_genbank_submissions.cpus</b><br />
        <i>Int &mdash; Default: 1</i><br />
        ???
</p>
<p name="genbank_gather.package_genbank_submissions.docker">
        <b>genbank_gather.package_genbank_submissions.docker</b><br />
        <i>String &mdash; Default: "python:slim"</i><br />
        ???
</p>
<p name="genbank_gather.package_genbank_submissions.mem_size">
        <b>genbank_gather.package_genbank_submissions.mem_size</b><br />
        <i>Int &mdash; Default: 2</i><br />
        ???
</p>
</details>

## Outputs
<p name="genbank_gather.ftp_submission_files">
        <b>genbank_gather.ftp_submission_files</b><br />
        <i>Array[File]</i><br />
        ???
</p>
<p name="genbank_gather.num_dengue_clean">
        <b>genbank_gather.num_dengue_clean</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_dengue_warnings">
        <b>genbank_gather.num_dengue_warnings</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_fluA_clean">
        <b>genbank_gather.num_fluA_clean</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_fluA_warnings">
        <b>genbank_gather.num_fluA_warnings</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_fluB_clean">
        <b>genbank_gather.num_fluB_clean</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_fluB_warnings">
        <b>genbank_gather.num_fluB_warnings</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_fluC_clean">
        <b>genbank_gather.num_fluC_clean</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_fluC_warnings">
        <b>genbank_gather.num_fluC_warnings</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_noro_clean">
        <b>genbank_gather.num_noro_clean</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_noro_warnings">
        <b>genbank_gather.num_noro_warnings</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_sc2_clean">
        <b>genbank_gather.num_sc2_clean</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_sc2_warnings">
        <b>genbank_gather.num_sc2_warnings</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_sqns_clean">
        <b>genbank_gather.num_sqns_clean</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.num_sqns_warnings">
        <b>genbank_gather.num_sqns_warnings</b><br />
        <i>Int</i><br />
        ???
</p>
<p name="genbank_gather.submit_dengue_clean_zip">
        <b>genbank_gather.submit_dengue_clean_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_dengue_warnings_zip">
        <b>genbank_gather.submit_dengue_warnings_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_fluA_clean_zip">
        <b>genbank_gather.submit_fluA_clean_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_fluA_warnings_zip">
        <b>genbank_gather.submit_fluA_warnings_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_fluB_clean_zip">
        <b>genbank_gather.submit_fluB_clean_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_fluB_warnings_zip">
        <b>genbank_gather.submit_fluB_warnings_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_fluC_clean_zip">
        <b>genbank_gather.submit_fluC_clean_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_fluC_warnings_zip">
        <b>genbank_gather.submit_fluC_warnings_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_noro_clean_zip">
        <b>genbank_gather.submit_noro_clean_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_noro_warnings_zip">
        <b>genbank_gather.submit_noro_warnings_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_sc2_clean_zip">
        <b>genbank_gather.submit_sc2_clean_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_sc2_warnings_zip">
        <b>genbank_gather.submit_sc2_warnings_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_sqns_clean_zip">
        <b>genbank_gather.submit_sqns_clean_zip</b><br />
        <i>File?</i><br />
        ???
</p>
<p name="genbank_gather.submit_sqns_warnings_zip">
        <b>genbank_gather.submit_sqns_warnings_zip</b><br />
        <i>File?</i><br />
        ???
</p>

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