4.52. sarscov2_sequencing_reports

Produce per-state and per-collaborator weekly reports of SARS-CoV-2 surveillance data.

4.52.1. Inputs

4.52.1.1. Required inputs

sarscov2_sequencing_reports.sequencing_report.assembly_stats_tsv
File — Default: None
???

sarscov2_sequencing_reports.sequencing_report.collab_ids_tsv
File — Default: None
???

4.52.1.2. Other inputs

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sarscov2_sequencing_reports.sequencing_report.docker
String — Default: "quay.io/broadinstitute/sc2-rmd:0.1.4"
???

sarscov2_sequencing_reports.sequencing_report.intro_blurb
String? — Default: None
???

sarscov2_sequencing_reports.sequencing_report.min_date
String? — Default: None
???

sarscov2_sequencing_reports.sequencing_report.min_unambig
Int? — Default: None
???

sarscov2_sequencing_reports.sequencing_report.sequencing_lab
String? — Default: None
???

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