4.69. subsampler_only¶

4.69.1. Inputs¶

subsampler_only.subsample_by_cases.case_data
File — Default: None
???

subsampler_only.subsample_by_cases.geo_column
String — Default: None
???

subsampler_only.subsample_by_cases.id_column
String — Default: None
???

subsampler_only.subsample_by_cases.metadata
File — Default: None
???

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subsampler_only.subsample_by_cases.baseline
Float — Default: 0.0001
???

subsampler_only.subsample_by_cases.date_column
String — Default: "date"
???

subsampler_only.subsample_by_cases.docker
String — Default: "quay.io/broadinstitute/subsampler"
???

subsampler_only.subsample_by_cases.end_date
String? — Default: None
???

subsampler_only.subsample_by_cases.filter_file
File? — Default: None
???

subsampler_only.subsample_by_cases.keep_file
File? — Default: None
???

subsampler_only.subsample_by_cases.machine_mem_gb
Int — Default: 30
???

subsampler_only.subsample_by_cases.remove_file
File? — Default: None
???

subsampler_only.subsample_by_cases.seed_num
Int? — Default: None
???

subsampler_only.subsample_by_cases.start_date
String? — Default: None
???

subsampler_only.subsample_by_cases.unit
String — Default: "week"
???

subsampler_only.genome_matrix_days_file
File
???

subsampler_only.matrix_cases_unit_file
File
???

subsampler_only.matrix_genomes_unit_corrected_file
File
???

subsampler_only.matrix_genomes_unit_file
File
???

subsampler_only.sampling_stats_file
File
???

subsampler_only.selected_metadata_file
File
???

subsampler_only.selected_sequences_file
File
???

subsampler_only.weekly_sampling_bias_file
File
???

subsampler_only.weekly_sampling_proportions_file
File
???

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