4.39. isnvs_lofreq¶
variant calls by LoFreq against reference_fasta
4.39.1. Inputs¶
4.39.1.1. Required inputs¶
isnvs_lofreq.aligned_bams
Array[File]+ — Default: None
reads aligned to the sequence within reference_fasta.
isnvs_lofreq.reference_fasta
File — Default: None
Reference sequence to which reads have be aligned
4.39.1.2. Other inputs¶
Show/Hide
isnvs_lofreq.lofreq.docker
String — Default: "quay.io/biocontainers/lofreq:2.1.5--py38h588ecb2_4"
???
isnvs_lofreq.lofreq.out_basename
String — Default: basename(aligned_bam,'.bam')
???
4.39.2. Outputs¶
isnvs_lofreq.lofreq_vcfs
Array[File]
???
isnvs_lofreq.lofreq_version
String
???
Generated using WDL AID (1.0.0)