4.12. qiime_import_bam¶

Importing BAM files into QIIME

4.12.1. Inputs¶

qiime_import_bam.reads_bam
Array[File] — Default: None
???

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qiime_import_bam.qiime_import_from_bam.cpu
Int — Default: 5
???

qiime_import_bam.qiime_import_from_bam.disk_size_gb
Int — Default: ceil((2 * 20)) + 5
???

qiime_import_bam.qiime_import_from_bam.docker
String — Default: "quay.io/broadinstitute/qiime2"
???

qiime_import_bam.qiime_import_from_bam.memory_mb
Int — Default: 7000
???

qiime_import_bam.qiime_import_from_bam.reads_qza
File
All unaligned reads in a single QZA (QIIME) file.

qiime_import_bam.qiime_import_from_bam.samplename_master_sheet
String
File contains all samples names.

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